Mouse testis B04652F6

Spatial Gene Expression of Mouse Testis Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq Transcriptomics Solution

Mouse Testis Demo Data

Chip SN: B04652F6

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: male; Age: 6-8 week)

Tissue :

Testis

Embedding method :

Fresh frozen

RIN value:

5.39

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.3

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

10 μm

Staining type :

DAPI + mIF staining

Permeabilization time :

9 min

Sequencing

Total reads :

406,753,020

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1

Bin200 Median MID : 65,504
Bin200 Median Gene Type : 10,225
Bin20 Median MID : 671
Bin20 Median Gene Type : 541
Cell Bin Gene Type : 349
Cell Bin MID : 410
Sequencing Saturation : 35.90%
Fraction MID in Sports Under Tissue : 83.26%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
B04652F6_input_command_download	TXT	1.49KB	65988ade5d67b1040b74706b9d81531c
V350314786_L01_read_1.fq.gz	FQ	10.28GB	1f3f025d3ea39f0a54bef6343b148f76
V350314786_L01_read_2.fq.gz	FQ	24.20GB	9222cae71579adf850af9b6bfb87f73d
B04652F6_SC_20250305_142133_4.1.1.tar.gz	TAR	318.91MB	ad8b48a639769234b819480261e81757
B04652F6.barcodeToPos.h5	H5	2.74GB	5bb2df5fe7260d0f671e1addea935df9

Output and supplemental files	Format	Size	md5sum
B04652F6_output_command_download	TXT	3.18KB	3d6e6b291e0df7d3685c29bf6411fa8a
B04652F6.tif.tar.gz	TAR	271.92MB	a69fadbe94eb7aba72c0e553edbdbf13
B04652F6_DAPI_regist.tif	TIFF	133.92MB	f71ae6d7a3b5cad9702f909c04429c4e
B04652F6.adjusted.cellbin.gef	GEF	1.25GB	dff7754447130560e59f6377b282118f
B04652F6.cellbin.gef	GEF	731.91MB	b129c4c1c28edb28b93840da43f249ce
B04652F6.tissue.gem.gz	GEM	521.98MB	4f874f499053cd8d04b9ecab325f9cc4
B04652F6.tissue.gef	GEF	7.29GB	14a67f95bbc28aa44b0b92a92b64aa0f
B04652F6.raw.gef	GEF	1.23GB	2d5bba54254e1cfca11a16f421f0a7d4
B04652F6.report.html	HTML	41.45MB	23157ed415b8ac7442bbf43ec6c21845
B04652F6.visualization.tar.gz	TAR	4.38GB	5e73a9d59845f68d4656c10da5c7e63a

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