Mouse testis B04652F6

Spatial Gene Expression of Mouse Testis Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq Transcriptomics Solution

Mouse Testis Demo Data

Chip SN: B04652F6

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: male; Age: 6-8 week)

Tissue :

Testis

Embedding method :

Fresh frozen

RIN value/DV :

5.39

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.3

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

10 μm

Staining type :

DAPI + mIF staining

Permeabilization time :

9 min

Sequencing

Total reads :

406,753,020

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1

Bin200 Median MID : 44,831
Bin200 Median Gene Type : 6,087
Cell Bin Gene Type : 186
Cell Bin MID : 442
Sequencing Saturation : 73.1%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
Sequencing FASTQ Files B04652F6_input_command_download	TXT	1.49KB	65988ade5d67b1040b74706b9d81531c
V350314786_L01_read_2.fq.gz	FQ	24.20GB	9222cae71579adf850af9b6bfb87f73d
V350314786_L01_read_1.fq.gz	FQ	10.28GB	1f3f025d3ea39f0a54bef6343b148f76
B04652F6_SC_20250305_142133_4.1.1.tar.gz	TAR	318.91MB	ad8b48a639769234b819480261e81757
B04652F6.barcodeToPos.h5	H5	2.74GB	5bb2df5fe7260d0f671e1addea935df9

Output and supplemental files	Format	Size	md5sum
Sequencing FASTQ Files B04652F6_output_command_download	TXT	3.18KB	3d6e6b291e0df7d3685c29bf6411fa8a
B04652F6.tif.tar.gz	TAR	271.92MB	a69fadbe94eb7aba72c0e553edbdbf13
B04652F6_DAPI_regist.tif	TIFF	133.92MB	https://ftp.cngb.org/pub/stomics/STT0000124/Analysis/STSA0000997/STTS0001574/B04652F6_DAPI_regist.tif
B04652F6.adjusted.cellbin.gef	GEF	1.25GB	dff7754447130560e59f6377b282118f
B04652F6.cellbin.gef	GEF	731.91MB	b129c4c1c28edb28b93840da43f249ce
B04652F6.tissue.gem.gz	GEM	521.98MB	4f874f499053cd8d04b9ecab325f9cc4
B04652F6.tissue.gef	GEF	7.29GB	14a67f95bbc28aa44b0b92a92b64aa0f
B04652F6.raw.gef	GEF	1.23GB	2d5bba54254e1cfca11a16f421f0a7d4
B04652F6.report.html	HTML	41.45MB	23157ed415b8ac7442bbf43ec6c21845
B04652F6.visualization.tar.gz	TAR	4.38GB	5e73a9d59845f68d4656c10da5c7e63a

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