Mouse spleen C04776D6

Spatial Gene and Protein Expression of Mouse Spleen Fresh Frozen Tissue

Stereo-CITE T FF V1.1, software version: SAW 8.1 & StereoMap 4.1

Stereo-CITE Solution

Mouse spleen Demo Data

Chip SN: C04776D6

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: male; Age: 6-8 week)

Tissue :

Spleen

Embedding method :

Fresh frozen

RIN value/DV :

6.5

Kit information

Product :

Stereo-CITE FF

Kit version :

Stereo-CITE T FF V1.1

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

10 μm

Staining type :

DAPI staining

Permeabilization time :

12 min

Sequencing

Total reads :

2,727,841,217

Sequencer :

DNBSEQ-T7RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 92,454
Bin200 Median Gene Type : 11,526
Cell Bin Gene Type : 380
Cell Bin MID : 480
Sequencing Saturation : 75%
Fraction MID in Spots Under Tissue : 77.35%
Manual tissue segmentation was performed.

Explore View report >

Input files Output and supplemental files

Input files	Format	Size	md5sum
Sequencing FASTQ Files C04776D6_input_command_download	TXT	3.68KB	da8da22d1302ed3b9a6854a096956830
E250047428_L01_12_2.fq.gz	FQ	48.49GB	3cd429019ad4b8229f2d812d7ca12fc1
E250047428_L01_12_1.fq.gz	FQ	27.13GB	ae8a4077d6fa67bbf417a92d0587c676
E250047428_L01_11_2.fq.gz	FQ	46.64GB	aed57f2461b4f137742cf32d3f7122d1
E250047428_L01_11_1.fq.gz	FQ	26.06GB	79ea7675cebd71406f7b74145e92d6a0
E250047428_L01_10_2.fq.gz	FQ	120.68GB	710d7ff0fd2c54525666717e45f49557
E250047428_L01_10_1.fq.gz	FQ	55.73GB	7cdd9bf08be853b3e1f101539c29bcbe
E250047428_L01_9_2.fq.gz	FQ	84.11GB	bf0b848cd73fadedd338bac1b9892d8b
E250047428_L01_9_1.fq.gz	FQ	38.70GB	703d32729037e500c9e0c5588662353c
C04776D6_SC_20250306_110538_4.1.1.tar.gz	TAR	177.47MB	3b6cc36b4ba7145095f479a1b834c652
C04776D6.barcodeToPos.h5	H5	2.75GB	031abb7137f5692d89232f7700d0dd52

Output and supplemental files	Format	Size	md5sum
Sequencing FASTQ Files C04776D6_output_command_download	TXT	3.96KB	de6a7d07e18ff1c8c765c55335bbe21e
C04776D6_DAPI_regist.tif	TIFF	147.22MB	4eed766e720430706812ba58f3c2d5d7
C04776D6.protein.adjusted.cellbin.gef	GEF	413.98MB	3656ab33f4fe3950704e4a233702450d
C04776D6.protein.cellbin.gef	GEF	386.69MB	6ab0f999756134f54f7a85aba7a6b4eb
C04776D6.protein.tissue.gem.gz	GEM	1.44GB	830da04bf8d2bf7bad88a7b48268a32d
C04776D6.protein.tissue.gef	GEF	7.86GB	71a137fd34f41959a5418f269f0377c8
C04776D6.protein.raw.gef	GEF	5.26GB	d414f9a53fae217faf68d98a0656b800
C04776D6.adjusted.cellbin.gef	GEF	1.86MB	833d0e5aeda370d98a6ba253c867fb03
C04776D6.cellbin.gef	GEF	1.28MB	d940260e58f299719978467252e9c9dd
C04776D6.tissue.gem.gz	GEM	794.43MB	ce2a9ebe41075aa77e273e31c492aa2c
C04776D6.tissue.gef	GEF	9.84GB	31062fa681ae41d2b771c4813ff5d43b
C04776D6.raw.gef	GEF	2.10GB	cd5320d753e2d1efaee489daf678e6a4
C04776D6.report.html	HTML	70.88MB	ce24c8f5d05c937f7ce25a1a323be8e9
C04776D6.visualization.tar.gz	TAR	8.51GB	ae315ffbb60c9b086b23854fb30d42e4

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