Mouse ovary B04372C211

Spatial Gene Expression of Mouse Ovary Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1

* STOmics database will undergo scheduled maintenance. Data download services will be available on July 30, 2025 (UTC+8).

Mouse ovary Demo Data

Chip SN: B04372C211

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Female; Age: 6-8 week)

Tissue :

Ovary

Embedding method :

Fresh frozen

RIN value :

9.49

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.3

Chip size :

0.5 cm × 0.5 cm

Experiment information

Section thickness :

10 μm

Staining type :

H&E staining

Permeabilization time :

12 min

Sequencing

Total reads :

238,585,596

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 68,513
Bin200 Median Gene Type : 10,392
Cell Bin Gene Type : 654
Cell Bin MID : 1,041
Sequencing Saturation : 43.10%
Fraction MID in Spots Under Tissue : 74.66%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
B04372C211_input_command_download	TXT	1.4K	bbdf1e3227ebe02cd98dad989cba1c18
V350282622_L04_read_1.fq.gz	FQ	7.85GB	6b9989e59cca8a020292419a42cd4162
V350282622_L04_read_2.fq.gz	FQ	9.01GB	6a4f262527ffe82a227df4b5e3c83691
B04372C211_SC_20240926_155854_4.1.0.tar.gz	TAR	193.42MB	0139916cd8de40321b90612328c55bf3
B04372C211.barcodeToPos.h5	H5	1.25GB	a2e8ad702928c02c84c006c31e7874f9

Output and supplemental files	Format	Size	md5sum
B04372C211_output_command_download	TXT	2.87KB	67675d4bef501b913eb8b1c402871c9f
B04372C211_HE_regist.tif	TIFF	192.17MB	ee67a0b0aeed5645decc4a12ad843554
B04372C211.adjusted.cellbin.gef	GEF	293.87MB	563b0d4b30843fa98906ca1131582f84
B04372C211.cellbin.gef	GEF	208.32MB	c82a8afd83b4a983a56ff8b4604a2f89
B04372C211.tissue.gem.gz	GEM	151.72MB	1bf94dcc42de70140fedb310399ad1c6
B04372C211.tissue.gef	GEF	2.34GB	68c2aca3da74bb94d17969861b1fdeec
B04372C211.raw.gef	GEF	408.63MB	76892fa463cc95bd8b8161893051986f
B04372C211.report.tar.gz	TAR (HTML)	10.00MB	3deb134303fbecbf73dae852a89e7ffe
B04372C211.visualization.tar.gz	TAR	1.34GB	fec1b54626d53d7a972b2463987b53ab

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