STOmics STOmics

EN CN

Spatial Gene Expression of Mouse Ovary Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1
Mouse ovary Demo Data
Chip SN: B04372C211
Sample information
Kit information
Experiment information
Sequencing
Analysis result
Input file & Output and supplemental files
Data Details
Sample information
Species
Mouse (Strain: C57BL/6; Sex: Female; Age: 6-8 week)
Tissue
Ovary
Embedding method
Fresh frozen
RIN value/DV
9.49
Kit information
Product
Stereo-seq FF
Kit version
Stereo-seq T FF V1.3
Chip size
0.5 cm × 0.5 cm
Experiment information
Section thickness
10 μm
Staining type
H&E staining
Permeabilization time
12 min
Sequencing
Total reads
238,585,596
Sequencer
DNBSEQ-G400RS
Analysis result
Clustering map
  • Analyze Software Version : SAW V8.1, StereoMap V4.1
  • Bin200 Median MID : 68,513
  • Bin200 Median Gene Type : 10,392
  • Cell Bin Gene Type : 654
  • Cell Bin MID : 1,041
  • Sequencing Saturation : 43.10%
  • Fraction MID in Spots Under Tissue : 74.66%

Input files Output and supplemental files
Input files Format Size md5sum
Sequencing FASTQ Files B04372C211_input_command_download TXT 1.4K bbdf1e3227ebe02cd98dad989cba1c18
V350282622_L04_read_2.fq.gz FQ 9.01GB 6a4f262527ffe82a227df4b5e3c83691
V350282622_L04_read_1.fq.gz FQ 7.85GB 6b9989e59cca8a020292419a42cd4162
B04372C211_SC_20240926_155854_4.1.0.tar.gz TAR 193.42MB 0139916cd8de40321b90612328c55bf3
B04372C211.barcodeToPos.h5 H5 1.25GB a2e8ad702928c02c84c006c31e7874f9
Output and supplemental files Format Size md5sum
Sequencing FASTQ Files B04372C211_output_command_download TXT 2.87KB 67675d4bef501b913eb8b1c402871c9f
B04372C211_HE_regist.tif TIFF 192.17MB ee67a0b0aeed5645decc4a12ad843554
B04372C211.adjusted.cellbin.gef GEF 293.87MB 563b0d4b30843fa98906ca1131582f84
B04372C211.cellbin.gef GEF 208.32MB c82a8afd83b4a983a56ff8b4604a2f89
B04372C211.tissue.gem.gz GEM 151.72MB 1bf94dcc42de70140fedb310399ad1c6
B04372C211.tissue.gef GEF 2.34GB 68c2aca3da74bb94d17969861b1fdeec
B04372C211.raw.gef GEF 408.63MB 76892fa463cc95bd8b8161893051986f
B04372C211.report.tar.gz TAR (HTML) 10.00MB 3deb134303fbecbf73dae852a89e7ffe
B04372C211.visualization.tar.gz TAR 1.34GB fec1b54626d53d7a972b2463987b53ab
Reach out to Us
Discover the power of Stereo-seq
Contact