STOmics STOmics

Login Sign up
EN CN
All
Products
Resources
News
FAQ
Search

Spatial Gene Expression of Mouse Ovary Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1
Stereo-seq Transcriptomics Solution
Mouse ovary Demo Data
Chip SN: B04372C211
Sample information
Kit information
Experiment information
Sequencing
Analysis result
Input file & Output and supplemental files
Data Details
Sample information
Species : 
Mouse (Strain: C57BL/6; Sex: Female; Age: 6-8 week)
Tissue : 
Ovary
Embedding method : 
Fresh frozen
RIN value : 
9.49
Kit information
Product : 
Stereo-seq FF
Kit version : 
Stereo-seq T FF V1.3
Chip size : 
0.5 cm × 0.5 cm
Experiment information
Section thickness : 
10 μm
Staining type : 
H&E staining
Permeabilization time : 
12 min
Sequencing
Total reads : 
238,585,596
Sequencer : 
DNBSEQ-G400RS
Analysis result
Clustering map
  • Analyze Software Version : SAW V8.1, StereoMap V4.1
  • Bin200 Median MID : 68,513
  • Bin200 Median Gene Type : 10,392
  • Cell Bin Gene Type : 654
  • Cell Bin MID : 1,041
  • Sequencing Saturation : 43.10%
  • Fraction MID in Spots Under Tissue : 74.66%

Explore View report
Input files Output and supplemental files
Select All
 Input files Format Size md5sum
Download Selected
B04372C211_input_command_download TXT bbdf1e3227ebe02cd98dad989cba1c18
V350282622_L04_read_1.fq.gz FQ 7.85GB 6b9989e59cca8a020292419a42cd4162
V350282622_L04_read_2.fq.gz FQ 9.01GB 6a4f262527ffe82a227df4b5e3c83691
B04372C211_SC_20240926_155854_4.1.0.tar.gz TAR 193.42MB 0139916cd8de40321b90612328c55bf3
B04372C211.barcodeToPos.h5 H5 1.25GB a2e8ad702928c02c84c006c31e7874f9
Select All
 Output and supplemental files Format Size md5sum
Download Selected
B04372C211_output_command_download TXT
B04372C211_HE_regist.tif TIFF 192.17MB ee67a0b0aeed5645decc4a12ad843554
B04372C211.adjusted.cellbin.gef GEF 293.88MB 4cd0e0ee35a0ddb5887e1397de6d5d38
B04372C211.cellbin.gef GEF 208.33MB 37b91f52923c3cd90ddf13ddc1efe408
B04372C211.tissue.gem.gz GEM 151.72MB 1bf94dcc42de70140fedb310399ad1c6
B04372C211.tissue.gef GEF 2.34GB 68c2aca3da74bb94d17969861b1fdeec
B04372C211.raw.gef GEF 408.63MB 76892fa463cc95bd8b8161893051986f
B04372C211.report.tar.gz TAR (HTML) 10.00MB 3deb134303fbecbf73dae852a89e7ffe
B04372C211.visualization.tar.gz TAR 1.28GB 6a107ecb6e0071d0fe0b2b5bc7812fd1
Reach out to Us
Discover the power of Stereo-seq
Contact
The website uses cookies
We use cookies to make sure that the website works well for you. By clicking on the "I accept recommended cookies" button you agree to our use of cookies. Read more about our cookie policy.
I accept the recommended cookies