Mouse tongue B04372C214

Spatial Gene Expression of Mouse Tongue Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq Transcriptomics Solution

Mouse tongue Demo Data

Chip SN: B04372C214

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Male; Age: 6-8 week)

Tissue :

Tongue

Embedding method :

Fresh frozen

RIN value/DV :

4.9

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.3

Chip size :

0.5 cm × 0.5 cm

Experiment information

Section thickness :

10 μm

Staining type :

H&E staining

Permeabilization time :

12 min

Sequencing

Total reads :

1,184,524,188

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 113,966
Bin200 Median Gene Type : 11,790
Cell Bin Gene Type : 916
Cell Bin MID : 1,698
Sequencing Saturation : 73.50%
Fraction MID in Spots Under Tissue : 81.46%

Explore View report >

Input files Output and supplemental files

Input files	Format	Size	md5sum
Sequencing FASTQ Files B04372C214_input_command_download	TXT	3.5K	df0bfe6c3448e892d6aaa87ee9abec98
V350285673_L04_read_2.fq.gz	FQ	9.92GB	b15557d2e72f2ef6e5bbc1a3b7fc8aa4
V350285673_L04_read_1.fq.gz	FQ	8.62GB	4f1c6404954aff29fd28c7c143a78848
V350285673_L03_read_2.fq.gz	FQ	9.80GB	0120b8cfe431ca829e4f3a53cfbbb063
V350285673_L03_read_1.fq.gz	FQ	8.55GB	69bd470f7fe8f160b28553dfb74e3ea1
V350285673_L02_read_2.fq.gz	FQ	8.64GB	e535bfa9b2e0b409d6861425f87d13ae
V350285673_L02_read_1.fq.gz	FQ	7.52GB	7e0b45a1e7c75eab657518c3f2d8e45c
V350285673_L01_read_2.fq.gz	FQ	9.63GB	c0eb296b85e22dc4cac5e7a75f6285ab
V350285673_L01_read_1.fq.gz	FQ	8.43GB	52995eb3764ef3fd4bd449927fad1723
B04372C214_SC_20240925_145336_4.1.0.tar.gz	TAR	418.55MB	f83e7d6a52c1ff2cbbf1f23a69362bd6
B04372C214.barcodeToPos.h5	H5	808.98MB	8db1a79f230e8f9fe131bc3ce646ad9a

Output and supplemental files	Format	Size	md5sum
Sequencing FASTQ Files B04372C214_output_command_download	TXT	2.87KB	dd2ef14cede6a1f992057d876e1faccd
B04372C214_HE_regist.tif	TIFF	278.80MB	a5cfcadc976a5ac71bcc8bfb4d89d5a5
B04372C214.adjusted.cellbin.gef	GEF	583.47MB	ea26b48e6d31f5bbadba2cc58e7b558f
B04372C214.cellbin.gef	GEF	348.92MB	0305adddaa00caaf232bc8fc77d6854e
B04372C214.tissue.gem.gz	GEM	343.85MB	946fe2142bd6b43f10186f3e57752b7c
B04372C214.tissue.gef	GEF	3.77GB	e382775a41fe2453f3bd050ef2871953
B04372C214.raw.gef	GEF	879.11MB	6156ba1530888cbbb89948913f050d4e
B04372C214.report.tar.gz	TAR (HTML)	12.57MB	d378f5e9c6cb1f242987796549de6f9e
B04372C214.visualization.tar.gz	TAR	2.74GB	24c18f651e601f721c2733090552be78

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