Mouse brain C04042E3

Spatial Gene Expression of Mouse Brain Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq Transcriptomics Solution

Mouse brain Demo Data

Chip SN: C04042E3

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Male; Age: 8-9 week)

Tissue :

Whole brain

Embedding method :

Fresh frozen

RIN value/DV :

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.3

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

10 μm

Staining type :

H&E staining

Permeabilization time :

12 min

Sequencing

Total reads :

1,577,388,478

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 60,353
Bin200 Median Gene Type : 9,059
Cell Bin Gene Type : 735
Cell Bin MID : 1,223
Sequencing Saturation : 46.20%
Fraction MID in Spots Under Tissue : 92.16%

Explore View report >

Input files Output and supplemental files

Input files	Format	Size	md5sum
Sequencing FASTQ Files C04042E3_input_command_download	TXT	4.9K	55a61f36656e23e69f4c046cd4f70e10
V350282428_L04_read_2.fq.gz	FQ	9.90GB	94befe7c81ae48e6512c76fca9067173
V350282428_L04_read_1.fq.gz	FQ	8.89GB	0de30ac4bbd8dd0f2cee11978f7f97ed
V350282428_L03_read_2.fq.gz	FQ	9.90GB	3143732db7622bae4f6aba674b832dfb
V350282428_L03_read_1.fq.gz	FQ	8.87GB	2847a0216376404c53325676c5f293f8
V350282428_L02_read_2.fq.gz	FQ	9.95GB	6fd0959a0bc97c7a3d3df2e40a7d3fae
V350282428_L02_read_1.fq.gz	FQ	9.06GB	7a1485131d05d5c55de0d8b24ae60675
V350282428_L01_read_2.fq.gz	FQ	10.03GB	bfe2aced6a48e17aa4628939fc8d4630
V350282428_L01_read_1.fq.gz	FQ	9.07GB	087d900f93dd718e0b61e9c4b434c74d
V350272809_L01_read_2.fq.gz	FQ	12.99GB	5d240fef169381c28812fd16a01e2bd5
V350272809_L01_read_1.fq.gz	FQ	10.18GB	5b0f166e29adc27d967f6523a1ab88c0
V350264830_L01_read_2.fq.gz	FQ	4.10GB	6869fe802cba3137cf301605edc2a7f2
V350264830_L01_read_1.fq.gz	FQ	4.28GB	c45b2e1bf606410b0e03aea90c400ebe
C04042E3_SC_20240925_142342_4.1.0.tar.gz	TAR	1.09GB	ab7b57c94d5a14845a41918b69f685d0
C04042E3.barcodeToPos.h5	H5	3.02GB	5f28fad742bbc9cdb68e26be7b66fe2e

Output and supplemental files	Format	Size	md5sum
Sequencing FASTQ Files C04042E3_output_command_download	TXT	2.84KB	f0fdfeea11c6091485f9c9719cb4d4c1
C04042E3_HE_regist.tif	TIFF	969.92MB	0ab95b22bc412901feb64fd901482c10
C04042E3.cellbin.gef	GEF	737.70MB	451c6fb8763a049a189d81f3fe548dee
C04042E3.adjusted.cellbin.gef	GEF	1.66GB	e368aafc3fd14398deac6bf587cd8e86
C04042E3.tissue.gem.gz	GEM	1.20GB	73f548f82dc1ca72898f48f9511842b8
C04042E3.tissue.gef	GEF	15.24GB	91b445ad833c43ce85b1f4d46a75c97d
C04042E3.raw.gef	GEF	2.52GB	360067888ef7fe35f52dc0b74a3127e6
C04042E3.report.tar.gz	TAR (HTML)	45.62MB	0485143f4433bd06c3a5100795759053
C04042E3.visualization.tar.gz	TAR	10.41GB	26acdc77791989745e90ec4e5cba37f5

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