Mouse eyeball C04687E314

Spatial Gene Expression of Mouse eyeball Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq Transcriptomics Solution

Mouse eyeball Demo Data

Chip SN: C04687E314

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Male; Age: 6-8 week)

Tissue :

Eyeball

Embedding method :

Fresh frozen

RIN value :

8.04

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.3

Chip size :

0.5 cm × 0.5 cm

Experiment information

Section thickness :

10 μm

Staining type :

H&E staining

Permeabilization time :

12 min

Sequencing

Total reads :

662,311,476

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 45,680
Bin200 Median Gene Type : 7,545
Cell Bin Gene Type : 586
Cell Bin MID : 1,035
Sequencing Saturation : 86.30%
Fraction MID in Spots Under Tissue : 56.70%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
C04687E314_input_command_download	TXT	2.19KB	36b7467c70bce64ae0b6baf8aa786c2d
V350284656_L04_read_1.fq.gz	FQ	9.25GB	01a9ee866bffae5336c69c0b5e398428
V350284656_L04_read_2.fq.gz	FQ	10.03GB	2372ac1da8298c5e430ebd3ce4223cee
V350284656_L03_read_1.fq.gz	FQ	10.03GB	b997451d4c04536f7921c9401d3aec14
V350284656_L03_read_2.fq.gz	FQ	10.37GB	9f1e72c446f1c891f4c062cfd6c1ade4
C04687E314_SC_20240926_173246_4.1.0.tar.gz	TAR	270.52MB	ae9ddc3a77181ae565f1effd972d65e2
C04687E314.barcodeToPos.h5	H5	1.00GB	29c0218f6b12c503c798e252a6c314c1

Output and supplemental files	Format	Size	md5sum
C04687E314_output_command_download	TXT	2.87KB	3bda47c6b2a8ca8a208ff10bd4244b9b
C04687E314_HE_regist.tif	TIFF	223.79MB	3cab17d71f95201e65048612e4831553
C04687E314.cellbin.gef	GEF	55.81MB	182c610976f448ce25df6bb2dc73d0ec
C04687E314.adjusted.cellbin.gef	GEF	90.58MB	3e5be5d05a7da66d2193029409298228
C04687E314.tissue.gem.gz	GEM	70.57MB	7a2fb1a507cdd0896d2f196fb7271f9b
C04687E314.tissue.gef	GEF	1.39GB	bea37d68aaf25204259a31aa4ea09340
C04687E314.raw.gef	GEF	245.93MB	40ecbb3d6703333ebb56ebf804459ada
C04687E314.report.tar.gz	TAR (HTML)	9.88MB	9988347d9b7dfe425bea906080bf7f74
C04687E314.visualization.tar.gz	TAR	840.72MB	bcb1b03a896b622e6712f81868fd0355

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