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Spatial Gene Expression of Mouse eyeball Fresh Frozen Tissue

Stereo-seq T FF V1.3, software version: SAW 8.1 & StereoMap 4.1
Stereo-seq Transcriptomics Solution
Mouse eyeball Demo Data
Chip SN: C04687E314
Sample information
Kit information
Experiment information
Sequencing
Analysis result
Input file & Output and supplemental files
Data Details
Sample information
Species : 
Mouse  (Strain: C57BL/6; Sex: Male; Age: 6-8 week)
Tissue : 
Eyeball
Embedding method : 
Fresh frozen
RIN value : 
8.04
Kit information
Product : 
Stereo-seq FF
Kit version : 
Stereo-seq T FF V1.3
Chip size : 
0.5 cm × 0.5 cm    
Experiment information
Section thickness : 
10 μm
Staining type : 
H&E staining
Permeabilization time : 
12 min
Sequencing
Total reads : 
662,311,476
Sequencer : 
DNBSEQ-G400RS
Analysis result
Clustering map
  • Analyze Software Version : SAW V8.1, StereoMap V4.1
  • Bin200 Median MID : 45,680
  • Bin200 Median Gene Type : 7,545
  • Cell Bin Gene Type : 586
  • Cell Bin MID : 1,035
  • Sequencing Saturation : 86.30%
  • Fraction MID in Spots Under Tissue : 56.70%

Explore View report
Input files Output and supplemental files
Select All
 Input files Format Size md5sum
Download Selected
C04687E314_input_command_download TXT
C04687E314.barcodeToPos.h5 H5 1.00GB 29c0218f6b12c503c798e252a6c314c1
C04687E314_SC_20240926_173246_4.1.0.tar.gz TAR 270.52MB ae9ddc3a77181ae565f1effd972d65e2
V350284656_L03_read_1.fq.gz FQ 10.02GB b997451d4c04536f7921c9401d3aec14
V350284656_L03_read_2.fq.gz FQ 10.36GB 9f1e72c446f1c891f4c062cfd6c1ade4
V350284656_L04_read_1.fq.gz FQ 9.25GB 01a9ee866bffae5336c69c0b5e398428
V350284656_L04_read_2.fq.gz FQ 10.03GB 2372ac1da8298c5e430ebd3ce4223cee
Select All
 Output and supplemental files Format Size md5sum
Download Selected
C04687E314_output_command_download TXT
C04687E314_HE_regist.tif TIFF 223.79MB 3cab17d71f95201e65048612e4831553
C04687E314.cellbin.gef GEF 55.81MB d711086a1c5ab9b84ccb25ba000bf27c
C04687E314.adjusted.cellbin.gef GEF 90.58MB 14816dd2346fe45a82c0b738825a6216
C04687E314.tissue.gem.gz GEM 70.57MB 7a2fb1a507cdd0896d2f196fb7271f9b
C04687E314.tissue.gef GEF 1.39GB bea37d68aaf25204259a31aa4ea09340
C04687E314.raw.gef GEF 245.93MB 40ecbb3d6703333ebb56ebf804459ada
C04687E314.report.tar.gz TAR (HTML) 9.88MB 9988347d9b7dfe425bea906080bf7f74
C04687E314.visualization.tar.gz TAR 840.72MB 8b0d75e8c2009501f73c41a68dc9dd40
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