Mouse lung C04495G4

Spatial Gene Expression of Mouse Lung Formalin-fixed Paraffin Embedded Tissue

Stereo-seq N FFPE V1.0, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq OMNI Solution

Mouse lung Demo Data

Chip SN: C04495G4

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Female; Age: 4-8 week)

Tissue :

Lung

Embedding method :

Formalin-fixed paraffin embedded

DV200 :

＞70%

Kit information

Product :

Stereo-seq OMNI FFPE

Kit version :

Stereo-seq N FFPE V1.0

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

5 μm

Staining type :

H&E staining

Permeabilization time :

30 min

Sequencing

Total reads :

2,936,941,526

Sequencer :

DNBSEQ-G400RS; DNBSEQ-T7RS

Analysis result

Heatmap

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 36,892
Bin200 Median Gene Type : 5,299

Sequencing Saturation : 75.10%
Fraction MID in Spots Under Tissue : 68.58%

Explore View report >

Input files Output and supplemental files

Input files	Format	Size	md5sum
C04495G4_input_command_download	TXT	6.45KB	f3ae55786a852077137ced0ebd9cf75e
V350296374_L02_read_1.fq.gz	FQ	7.44GB	0b7999974fd0172a49da319c2ca883d1
V350296374_L02_read_2.fq.gz	FQ	17.00GB	a74eb7010891d0193b60b91b6549b478
V350296374_L01_read_1.fq.gz	FQ	7.51GB	bd4e231a83f1529257ba347626e41266
V350296374_L01_read_2.fq.gz	FQ	17.06GB	8b4615a9fa827f816451cf7d918dac60
V350296372_L04_read_1.fq.gz	FQ	7.29GB	2e78541d5d31fc1c18110f98693d6cb6
V350296372_L04_read_2.fq.gz	FQ	16.56GB	3e53ad800c66f0cd4af93468c6119da7
V350296372_L03_read_1.fq.gz	FQ	7.09GB	df5c68334335e61f93950cc2bb4c1e45
V350296372_L03_read_2.fq.gz	FQ	16.06GB	034ce9f7660364bfd7649fdefde92d0e
V350296372_L02_read_1.fq.gz	FQ	7.21GB	abc423fb5b00c64599ebb86b96d3ee42
V350296372_L02_read_2.fq.gz	FQ	16.32GB	5573f38f8aecc49f34570e6a9d9e3566
V350296372_L01_read_1.fq.gz	FQ	7.46GB	b89e13b51c07e7efc8f9d74c29dfe673
V350296372_L01_read_2.fq.gz	FQ	16.84GB	b956823b4aebe35dfc214f1148af794b
E250018389_L01_16_1.fq.gz	FQ	9.78GB	52f21343e7cfa0abc45f8c9c2cbf501b
E250018389_L01_16_2.fq.gz	FQ	17.85GB	86e226242999404eac5d23219707c8b4
E250018389_L01_13_2.fq.gz	FQ	16.74GB	d081adcdec541ca162480bbd69c4e8c2
E250018389_L01_13_1.fq.gz	FQ	9.13GB	74c639f439bc67893c21b1790de50752
C04495G4_SC_20240822_111031_4.0.1.tar.gz	TAR	1.23GB	2f3e4a503b020e754b305e5a84e98357
C04495G4.barcodeToPos.h5	H5	2.86GB	5aa2f25a259ed6e2cb9622a7f2edff30

Output and supplemental files	Format	Size	md5sum
C04495G4_output_command_download	TXT	4.52KB	87798b128519333355f6131b286baaae
C04495G4_microorganism.species.gem	GEM	4.29MB	bcdddc6f46d1e7d343f0df78acce3759
C04495G4_microorganism.phylum.gem	GEM	7.07MB	c7e45ce7f57351cfacc2c7d3d8700e38
C04495G4_microorganism.order.gem	GEM	6.16MB	fb5a1fc2da5f3c3284a1349d71e729fa
C04495G4_microorganism.genus.gem	GEM	4.44MB	0077a0511fc828438eead4f3964d0315
C04495G4_microorganism.family.gem	GEM	5.93MB	23fde94d569a532c08b291f8f138be98
C04495G4_microorganism.class.gem	GEM	7.42MB	cf449a2d57a75f40bd3ac26427ddabe0
C04495G4.microorganism.raw.gef	GEF	1.81GB	6b4a292fdcceca9a8305b6cedf7ea31a
C04495G4_HE_regist.tif	TIFF	957.22MB	cdf6bdb9d58e68af3a5a530f5a7f20cf
C04495G4.tissue.gem.gz	GEM	286.15MB	9bf606d95efd861c720e6997cd62125d
C04495G4.tissue.gef	GEF	4.54GB	5671bec9e7f408b664c52b025f2bb9d9
C04495G4.raw.gef	GEF	889.90MB	d5a784a173ddccf377b5cc679dce3859
C04495G4.report.html	HTML	51.04MB	a2208d70c3db22d38e38ad09422fb247
C04495G4.visualization.tar.gz	TAR	4.03GB	8d5b28cec3f58c56620b7400a9becd9f

Reach out to Us

Discover the power of Stereo-seq

Contact