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Spatial Gene Expression of Mouse Lung Formalin-fixed Paraffin Embedded Tissue

Stereo-seq N FFPE V1.0, software version: SAW 8.1 & StereoMap 4.1
Stereo-seq OMNI Solution
Mouse lung Demo Data
Chip SN: C04495G4
Sample information
Kit information
Experiment information
Sequencing
Analysis result
Input file & Output and supplemental files
Data Details
Sample information
Species : 
Mouse (Strain: C57BL/6; Sex: Female; Age: 4-8 week)
Tissue : 
Lung
Embedding method : 
Formalin-fixed paraffin embedded    
DV200 : 
＞70%
Kit information
Product : 
Stereo-seq OMNI FFPE    
Kit version : 
Stereo-seq N FFPE V1.0    
Chip size : 
1 cm × 1 cm
Experiment information
Section thickness : 
5 μm
Staining type : 
H&E staining
Permeabilization time : 
30 min
Sequencing
Total reads : 
2,936,941,526
Sequencer : 
DNBSEQ-G400RS; DNBSEQ-T7RS
Analysis result
Heatmap
  • Analyze Software Version : SAW V8.1, StereoMap V4.1
  • Bin200 Median MID : 36,892
  • Bin200 Median Gene Type : 5,299

  • Sequencing Saturation : 75.10%
  • Fraction MID in Spots Under Tissue : 68.58%

Explore View report
Input files Output and supplemental files
Select All
 Input files Format Size md5sum
Download Selected
C04495G4_input_command_download TXT 6.45KB f3ae55786a852077137ced0ebd9cf75e
V350296374_L02_read_1.fq.gz FQ 7.44GB 0b7999974fd0172a49da319c2ca883d1
V350296374_L02_read_2.fq.gz FQ 17.00GB a74eb7010891d0193b60b91b6549b478
V350296374_L01_read_1.fq.gz FQ 7.51GB bd4e231a83f1529257ba347626e41266
V350296374_L01_read_2.fq.gz FQ 17.06GB 8b4615a9fa827f816451cf7d918dac60
V350296372_L04_read_1.fq.gz FQ 7.29GB 2e78541d5d31fc1c18110f98693d6cb6
V350296372_L04_read_2.fq.gz FQ 16.56GB 3e53ad800c66f0cd4af93468c6119da7
V350296372_L03_read_1.fq.gz FQ 7.09GB df5c68334335e61f93950cc2bb4c1e45
V350296372_L03_read_2.fq.gz FQ 16.06GB 034ce9f7660364bfd7649fdefde92d0e
V350296372_L02_read_1.fq.gz FQ 7.21GB abc423fb5b00c64599ebb86b96d3ee42
V350296372_L02_read_2.fq.gz FQ 16.32GB 5573f38f8aecc49f34570e6a9d9e3566
V350296372_L01_read_1.fq.gz FQ 7.46GB b89e13b51c07e7efc8f9d74c29dfe673
V350296372_L01_read_2.fq.gz FQ 16.84GB b956823b4aebe35dfc214f1148af794b
E250018389_L01_16_1.fq.gz FQ 9.78GB 52f21343e7cfa0abc45f8c9c2cbf501b
E250018389_L01_16_2.fq.gz FQ 17.85GB 86e226242999404eac5d23219707c8b4
E250018389_L01_13_2.fq.gz FQ 16.74GB d081adcdec541ca162480bbd69c4e8c2
E250018389_L01_13_1.fq.gz FQ 9.13GB 74c639f439bc67893c21b1790de50752
C04495G4_SC_20240822_111031_4.0.1.tar.gz TAR 1.23GB 2f3e4a503b020e754b305e5a84e98357
C04495G4.barcodeToPos.h5 H5 2.86GB 5aa2f25a259ed6e2cb9622a7f2edff30
Select All
 Output and supplemental files Format Size md5sum
Download Selected
C04495G4_output_command_download TXT 4.52KB 87798b128519333355f6131b286baaae
C04495G4_microorganism.species.gem GEM 4.29MB bcdddc6f46d1e7d343f0df78acce3759
C04495G4_microorganism.phylum.gem GEM 7.07MB c7e45ce7f57351cfacc2c7d3d8700e38
C04495G4_microorganism.order.gem GEM 6.16MB fb5a1fc2da5f3c3284a1349d71e729fa
C04495G4_microorganism.genus.gem GEM 4.44MB 0077a0511fc828438eead4f3964d0315
C04495G4_microorganism.family.gem GEM 5.93MB 23fde94d569a532c08b291f8f138be98
C04495G4_microorganism.class.gem GEM 7.42MB cf449a2d57a75f40bd3ac26427ddabe0
C04495G4.microorganism.raw.gef GEF 1.81GB 6b4a292fdcceca9a8305b6cedf7ea31a
C04495G4_HE_regist.tif TIFF 957.22MB cdf6bdb9d58e68af3a5a530f5a7f20cf
C04495G4.tissue.gem.gz GEM 286.15MB 9bf606d95efd861c720e6997cd62125d
C04495G4.tissue.gef GEF 4.54GB 5671bec9e7f408b664c52b025f2bb9d9
C04495G4.raw.gef GEF 889.90MB d5a784a173ddccf377b5cc679dce3859
C04495G4.report.html HTML 51.04MB a2208d70c3db22d38e38ad09422fb247
C04495G4.visualization.tar.gz TAR 4.03GB 8d5b28cec3f58c56620b7400a9becd9f
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