Rat brain B01207E3G4

Spatial Gene Expression of Rat Brain Fresh Frozen Tissue

Stereo-seq T FF V1.2, software version: SAW 7.0 & StereoMap 3.0

Stereo-seq Large Chip Designs

Rat Brain Demo Data

Chip SN: B01207E3G4

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Rat (Strain: SD; Sex: Male; Age: 6-8 week)

Tissue :

Brain

Embedding method :

Fresh frozen

RIN value :

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.2

Chip size :

2 cm × 3 cm

Experiment information

Section thickness :

10 μm

Staining type :

DAPI staining

Permeabilization time :

12 min

Sequencing

Total reads :

28,020,201,071

Sequencer :

DNBSEQ-T20

Analysis result

Clustering map

Analyze Software Version : SAW V7.0, StereoMap V3.0
Bin200 Median MID : 68,103
Bin200 Median Gene Type : 8,217
Cell Bin Gene Type : 514
Cell Bin MID : 1,031
Sequencing Saturation : 93.60%
Fraction MID in Spots Under Tissue : 84.60%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
B01207E3G4_input_command_download	TXT	45.5KB	cdd32db2083ebbd2fac47b4574414be5

Output and supplemental files	Format	Size	md5sum
B01207E3G4_output_command_download	TXT	2.77KB	ed65aeedf6764844eef4976435425e17
B01207E3G4.rpi	RPI(H5)	3.32GB	04855edb6a1006275aa00ed004bd1ba9
DAPI_B01207E3G4_regist.tif	TIFF	5.07GB	fa1987e2c3c1d494ccb247caa429d74a
B01207E3G4.adjusted.cellbin.gef	GEF	3.42GB	650d2bf7e2448497309e9ce59067816a
B01207E3G4.cellbin.gef	GEF	1.64GB	3f7174aee2f371743caeb14a84a0cddd
B01207E3G4.tissue.gem.gz	GEM	2.04GB	e47ac4e81d8ade7586419ac7306ee06b
B01207E3G4.tissue.gef	GEF	4.19GB	5dc51dfd4928f2c017206c43830f1d1f
B01207E3G4.gef	GEF	39.13GB	2083ca94e6a424f5b273b911412b22da
B01207E3G4.report.html	HTML	47.44MB	c96c1581577543505c12edca9a37ec64

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