Mouse olfactory FP200009107_E414

Spatial Gene Expression of Mouse Olfactory Fresh Frozen Tissue

Stereo-seq T FF V1.2, software version: SAW 7.0 & StereoMap 3.0

Stereo-seq Transcriptomics Solution

Mouse Olfactory Demo Data

Chip SN: FP200009107_E414

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Male; Age: 6-8 week)

Tissue :

Olfactory bulb

Embedding method :

Fresh frozen

RIN value :

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.2

Chip size :

0.5 cm × 0.5 cm

Experiment information

Section thickness :

10 μm

Staining type :

DAPI staining

Permeabilization time :

6 min

Sequencing

Total reads :

37,937,582

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V7.0, StereoMap V3.0
Bin200 Median MID : 42,653
Bin200 Median Gene Type : 8,224
Cell Bin Gene Type : 359
Cell Bin MID : 566
Sequencing Saturation : 71.70%
Fraction MID in Spots Under Tissue : 83.20%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
FP200009107_E414_input_command_download	TXT	1.87KB	6637f3a9b6e1179ddda676bb030698ef
V350156884_L02_read_1.fq.gz	FQ	12.49GB	cb4b358221f7b6a2203f4dedfb422917
V350156884_L02_read_2.fq.gz	FQ	16.42GB	867e5a09bc08fd5d7443826a9e8879bf
FP200009107_E414_SC_20250403_150448_3.0.5.ipr	IPR (H5)	1.07MB	0fbd43844fb7d7580a610a2705fd36c7
FP200009107_E414_SC_20250403_150448_3.0.5.tar.gz	TAR	371.92MB	2593150cf5ae5434f261a407199950d2
FP200009107_E414.barcodeToPos.h5	H5	1.22GB	bb542fddf053807174db26c94c146846

Output and supplemental files	Format	Size	md5sum
FP200009107_E414_output_command_download	TXT	2.92KB	a7c620aa4a56d28fb53699f1919f0fa9
FP200009107_E414.rpi	RPI(H5)	269.76MB	ecb99ee46f8ec282d3fb881b30dfada6
FP200009107_E414.adjusted.cellbin.gef	GEF	240.29MB	eeaaf5ee0de3dfe76b04f436d7212137
FP200009107_E414.cellbin.gef	GEF	101.04MB	66a6a663ef278f048054dff92cc3df64
FP200009107_E414.tissue.gem.gz	GEM	124.45MB	e246c01ac300015919f775be6317c8ac
FP200009107_E414.tissue.gef	GEF	254.61MB	8fa1d9f3bae36b89a5e0c72e25dfa0d3
FP200009107_E414.report.html	HTML	10.94MB	2fa2a4a375c72fef1bc2a168d3de7321
FP200009107_E414.gef	GEF	2.88GB	f90aed091b355270f66d174f937f6805
DAPI_FP200009107_E414_regist.tif	TIFF	412.02MB	56e461d76d3bfa2a62f3deb09ca25ad9

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