Mouse kidney C02533C1

Spatial Gene Expression of Mouse Kidney Fresh Frozen Tissue

Stereo-seq T FF V1.2, software version: SAW 7.0 & StereoMap 3.0

Stereo-seq Transcriptomics Solution

Mouse Kidney Demo Data

Chip SN: C02533C1

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Male; Age: 6-8 week)

Tissue :

Kidney

Embedding method :

Fresh frozen

RIN value :

5.1

Kit information

Product :

Stereo-seq FF

Kit version :

Stereo-seq T FF V1.2

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

10 μm

Staining type :

H&E staining

Permeabilization time :

18 min

Sequencing

Total reads :

1,667,882,652

Sequencer :

DNBSEQ-G400RS

Analysis result

Clustering map

Analyze Software Version : SAW V7.0, StereoMap V3.0
Bin200 Median MID : 75,114
Bin200 Median Gene Type : 8,981
Cell Bin Gene Type : 375
Cell Bin MID : 655
Sequencing Saturation : 83.40%
Fraction MID in Spots Under Tissue : 85.20%

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Input files Output and supplemental files

Input files	Format	Size	md5sum
C02533C1_input_command_download	TXT	4.6K	ccb4e0f6925533e5b18b8ec88603080c
V350195543_L04_read_1.fq.gz	FQ	12.42GB	d1a4881bbfc0074212b42d5e3c8228a3
V350195543_L04_read_2.fq.gz	FQ	16.22GB	03fe774796ebcd80d4d2ccfb50c6fd1f
V350195543_L03_read_1.fq.gz	FQ	12.11GB	fc3c8f16d813660888f105db9cd40fcd
V350195543_L03_read_2.fq.gz	FQ	15.78GB	0d2f0f740a88f61a282215d070d01c99
V350195543_L02_read_1.fq.gz	FQ	11.88GB	33de276a382f73ba4c997e78487bf4fa
V350195543_L02_read_2.fq.gz	FQ	15.47GB	abd8832a0b47bcf981bc3f56970bb763
V350195543_L01_read_1.fq.gz	FQ	12.23GB	75a7a6c131593d2d67f64f447c257c59
V350195543_L01_read_2.fq.gz	FQ	15.94GB	f11fa68a675ccff535fc20635480f0e7
V300116245_L02_read_1.fq.gz	FQ	12.88GB	68220c9d6cb1b08d84d2d470ff29c5a7
V300116245_L02_read_2.fq.gz	FQ	16.75GB	111e6321975ae445df51595264458e9d
C02533C1_SC_20231031_203806_3.0.0.ipr	IPR (H5)	272.64KB	7c3f9518ab0f9f194cb242a0341d8b84
C02533C1_SC_20231031_203806_3.0.0.tar.gz	TAR	3.88GB	c3a5321c5936afd2e4efdf37774ff1bc
C02533C1.barcodeToPos.h5	H5	4.30GB	52f7fdbb235a279bdfc65565b1b68c12

Output and supplemental files	Format	Size	md5sum
C02533C1_output_command_download	TXT	2.79KB	112b91d8a6982629cc612fa45b0dbb0c
C02533C1.rpi	RPI(H5)	1.53GB	3097ef991609f8f64c54991ee0f467fa
HE_C02533C1_regist.tif	TIFF	3.91GB	d9e30603783fe66487fb6f4364fd5f8c
C02533C1.adjusted.cellbin.gef	GEF	761.22MB	a61426d648983b2e909d058329c3c984
C02533C1.cellbin.gef	GEF	444.89MB	e2b14d9a6ccbd084e459b7bd8dc8dc0b
C02533C1.tissue.gem.gz	GEM	358.71MB	3d32e56edeaab1b3984479315c26adc5
C02533C1.tissue.gef	GEF	767.02MB	d86ce302cdc72e7f0b540f3a21a3df8c
C02533C1.gef	GEF	9.03GB	eba5c943b534abc815374b40a7ec55e0
C02533C1.report.html	HTML	19.70MB	7cd22d5e1cc38555d8e67311847a92aa

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