Mouse brain C04144D5

Spatial Gene Expression of Mouse Brain Formalin-fixed Paraffin Embedded Tissue

Stereo-seq N FFPE V1.0, software version: SAW 8.1 & StereoMap 4.1

Stereo-seq OMNl Solution

Mouse Brain Demo Data

Chip SN: C04144D5

Sample information

Kit information

Experiment information

Sequencing

Analysis result

Input file & Output and supplemental files

Data Details

Sample information

Species :

Mouse (Strain: C57BL/6; Sex: Male; Age: 6-8 week)

Tissue :

Whole Brain

Embedding method :

Formalin-fixed paraffin embedded

DV200 :

＞70%

Kit information

Product :

Stereo-seq OMNI FFPE

Kit version :

Stereo-seq N FFPE V1.0

Chip size :

1 cm × 1 cm

Experiment information

Section thickness :

5 μm

Staining type :

ssDNA staining

Permeabilization time :

30 min

Sequencing

Total reads :

2,973,434,937

Sequencer :

DNBSEQ-G400RS, DNBSEQ-T7RS

Analysis result

Clustering map

Analyze Software Version : SAW V8.1, StereoMap V4.1
Bin200 Median MID : 44,831
Bin200 Median Gene Type : 6,087
Cell Bin Gene Type : 186
Cell Bin MID : 442
Sequencing Saturation : 73.10%
Fraction MID in Spots Under Tissue : 92.70%

Explore View report >

Input files Output and supplemental files

Input files	Format	Size	md5sum
C04144D5_input_command_download	TXT	4.27KB	f7a7b30e4a45d0dd6689e1c93682bd8f
V350265067_L03_read_1.fq.gz	FQ	8.87GB	d6125b2370590982163816002a88334f
V350265067_L03_read_2.fq.gz	FQ	18.04GB	d2aab38a968d47311388e71fed29beca
E250018411_L01_6_1.fq.gz	FQ	17.38GB	b3be1d6f17493c2adcc85880838d9be0
E250018411_L01_6_2.fq.gz	FQ	31.41GB	0d7e038127cbc9f91c880f3248206424
E250018411_L01_5_1.fq.gz	FQ	15.69GB	c4557a6688803817dd2dfe841fbf2de7
E250018411_L01_5_2.fq.gz	FQ	28.54GB	3ec1a3e15f120ff5a1693127569b8f3b
E250018259_L01_6_1.fq.gz	FQ	17.50GB	dff188d32ef7fedd481d277abc0dbd18
E250018259_L01_6_2.fq.gz	FQ	31.90GB	ea98d33b2cebc7575355c8792a5326f4
E250018259_L01_5_1.fq.gz	FQ	15.83GB	d3ca14970632ac2733e052b7277bc9ef
E250018259_L01_5_2.fq.gz	FQ	29.02GB	1c83ab5be8dcf3f54245c5e27526485f
C04144D5_SC_20240613_104803_4.0.0.tar.gz	TAR	195.15MB	4a20efc8870433433adb1565d3a7f0a8
C04144D5.barcodeToPos.h5	H5	3.17GB	da2e952f6a75d94f0fbfe964ff06835a

Output and supplemental files	Format	Size	md5sum
C04144D5_output_command_download	TXT	2.84KB	46ae0ba87f8f7625dcde9ce0afaeae35
C04144D5.visualization.tar.gz	TAR	4.67GB	53f51c70ec5345b12cec9105d088eef1
C04144D5.report.html	HTML	49.36MB	d50a26e59dea6180721c2f3a51e30636
C04144D5.raw.gef	GEF	1.55GB	bea87c3557e5e0f88f7ccfb228540f6a
C04144D5.tissue.gef	GEF	8.70GB	10a91141ad8d8cde08c7e7bac7fbef84
C04144D5.tissue.gem.gz	GEM	700.25MB	6e30d57127d6e78f50ca85c948a0e7fe
C04144D5.cellbin.gef	GEF	375.57MB	e3fe99113b38ff1f754b6cea1abdf9e4
C04144D5.adjusted.cellbin.gef	GEF	796.53MB	82e5362af62937d7ca8a87b254cf29ec
C04144D5_ssDNA_regist.tif	TIFF	158.84MB	6e1612b821c6586e0a225ea13bfcf742

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