STOmics STOmics

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STOmics has been widely applied in organogenesis, embryo development, evolution, neuroscience and oncology research, and other different fields. Up to now, approximately 30 papers using Stereo-seq have been published on CellNatureScience, and other top academic journals.

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Stereo-seq Solutions
Stereo-seq Large Chip Designs
Stereo-CITE Solution
Stereo-seq OMNI Solution

10/07/2024 DOI:10.1016/j.tplants.2024.06.00

Unraveling plant–microbe symbioses using single-cell and spatial transcriptomics

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Trends in Plant Science

04/07/2024 DOI:10.1038/s41592-024-02325-3

Systematic comparison of sequencing-based spatial transcriptomic methods

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Nature Methods Species·mouse Sample Type·a set of reference tissues

04/07/2024 DOI:10.1093/bib/bbae259

SpaNCMG: improving spatial domains identification of spatial transcriptomics using neighborhood-complementary mixed-view graph convolutional network

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Brief Bioinform

03/07/2024 DOI:10.1186/s12974-024-03161-0

Integrating single-nucleus RNA sequencing and spatial transcriptomics to elucidate a specialized subpopulation of astrocytes, microglia and vascular cells in brains of mouse model of lipopolysaccharide-induced sepsis-associated encephalopathy

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Journal of Neuroinflammation Species·mouse Sample Type·brain

28/06/2024 DOI:10.1093/bioinformatics/btae245

Deciphering high-order structures in spatial transcriptomes with graph-guided Tucker decomposition

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Bioinformatics

28/06/2024 DOI:10.1093/bioinformatics/btae219

A count-based model for delineating cell–cell interactions in spatial transcriptomics data

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Bioinformatics

28/06/2024 DOI:10.1093/bioinformatics/btae242

GraphCompass: Spatial metrics for differential analyses of cell organization across conditions

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Bioinformatics

25/06/2024 DOI:10.1016/j.celrep.2024.114216

Microglia-astrocyte crosstalk in the amyloid plaque niche of an Alzheimer's disease mouse model, as revealed by spatial transcriptomics

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Cell Reports Species·mouse Sample Type·brain

24/06/2024 DOI:10.1016/j.cell.2024.05.055

Open-ST: High-resolution spatial transcriptomics in 3D

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Cell

22/06/2024 DOI:10.1007/s12264-024-01241-y

Dentate Gyrus Morphogenesis is Regulated by an Autism Risk Gene Trio Function in Granule Cells

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Neuroscience Bulletin Species·mouse Sample Type·brain