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STOmics has been widely applied in organogenesis, embryo development, evolution, neuroscience and oncology research, and other different fields. Up to now, approximately 30 papers using Stereo-seq have been published on Cell, Nature, Science, and other top academic journals.

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28/04/2023 DOI:10.1101/2023.04.28.538364

Integrated Spatial Transcriptomic and Proteomic Analysis of Fresh Frozen Tissue Based on Stereo-seq

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bioRxiv

22/04/2023 DOI:10.1101/2023.04.22.537909

Spatiotemporal transcriptome atlas of human embryos after gastrulation

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bioRxiv

14/04/2023 DOI:10.21203/rs.3.rs-2726910/v1

Multi-omics characterization of cellular state diversity and bidirectional tumor-stroma/immune interactions in cervical squamous cell carcinoma

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Research Square

13/04/2023 DOI:10.1038/s41477-023-01387-z

Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation.

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Nature Plant Species·soybean Sample Type·nodules and roots

11/04/2023 DOI:10.1016/j.jgg.2023.04.001

VT3D: a visualization toolbox for 3D transcriptomic data

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Journal of Genetics and Genomics

31/03/2023 DOI:10.1101/2023.02.28.530414

StereoCell enables highly accurate single-cell segmentation for spatial transcriptomics

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bioRxiv

27/03/2023 Cheng, M. et al. DOI: 10.1016/j.jgg.2023.03.011

Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

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Journal of Genetics and Genomics Application·Technology

21/03/2023 DOI:10.1038/s41467-023-37168-7

A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics

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Nature Communications

16/03/2023 DOI:10.1038/s41556-023-01108-w

A single-cell transcriptome atlas profiles early organogenesis in human embryos

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Nature cell biology Species·human Sample Type·embryo

01/03/2023 DOI:10.1038/s41467-023-36796-3

Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST

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Nature Communications Application·Bioinformatic tools Species·human, mouse Sample Type·brain, breast,embryo
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