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STOmics> Resources>Publications

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STOmics has been widely applied in organogenesis, embryo development, evolution, neuroscience and oncology research, and other different fields. Up to now, approximately 30 papers using Stereo-seq have been published on Cell, Nature, Science, and other top academic journals.

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142results：

04/07/2024 DOI:10.1038/s41592-024-02325-3

Systematic comparison of sequencing-based spatial transcriptomic methods

Nature Methods Species·mouse Sample Type·a set of reference tissues

04/07/2024 DOI:10.1093/bib/bbae259

SpaNCMG: improving spatial domains identification of spatial transcriptomics using neighborhood-complementary mixed-view graph convolutional network

Brief Bioinform

28/06/2024 DOI:10.1093/bioinformatics/btae245

Deciphering high-order structures in spatial transcriptomes with graph-guided Tucker decomposition

Bioinformatics

28/06/2024 DOI:10.1093/bioinformatics/btae219

A count-based model for delineating cell–cell interactions in spatial transcriptomics data

Bioinformatics

28/06/2024 DOI:10.1093/bioinformatics/btae242

GraphCompass: Spatial metrics for differential analyses of cell organization across conditions

Bioinformatics

25/06/2024 DOI:10.1016/j.celrep.2024.114216

Microglia-astrocyte crosstalk in the amyloid plaque niche of an Alzheimer's disease mouse model, as revealed by spatial transcriptomics

Cell Reports Species·Mouse Sample Type·Brain

24/06/2024 DOI:10.1016/j.cell.2024.05.055

Open-ST: High-resolution spatial transcriptomics in 3D

Cell

22/06/2024 DOI:10.1007/s12264-024-01241-y

Dentate Gyrus Morphogenesis is Regulated by an Autism Risk Gene Trio Function in Granule Cells

Neuroscience Bulletin Species·mouse Sample Type·brain

21/06/2024 DOI:10.1038/s41592-024-02316-4

Deciphering spatial domains from spatial multi-omics with SpatialGlue

Nature Methods Species·mouse Sample Type·brain, thymus, spleen

20/06/2024 DOI:10.1186/s12943-024-02040-9

Advances in spatial transcriptomics and its applications in cancer research

Molecular Cancer

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