STOmics STOmics

EN CN
FAQ
Filter Clear
Products
Stereo-seq Solutions
Stereo-seq Solution - mIF
Stereo-seq Large Chip Designs
Stereo-CITE Solution
Stereo-seq OMNI Solution
STOmics Software
Stereo-seq Analysis Workflow
StereoMap
Technical Process
Sample Preparation
Operating Procedure
Experimental Results
STOmics Product
Image Process
Sequencing Analysis
Report Interpretation
101results:
Q When imaging the secondary antibody during the Stereo-CITE Proteo-Transcriptomics Set workflow, is the fluorescent imaging based on multiplex immunofluorescence or single-color immunofluorescence? What is its purpose?
A

Currently, fluorescent imaging using secondary antibodies is single-color, meaning that only one fluorescent secondary antibody is selected. This step primarily aims to determine whether the TotalSeq™-A series primary antibodies have successfully bound to the antigens in the tissue while excluding any abnormalities caused by experimental operations during antibody incubation.


Q What is the purpose of using sheared salmon sperm DNA?
A

Sheared salmon sperm DNA is added during the preparation of blocking solution and antibody incubation solution to reduce non-specific adsorption of antibody-derived-tag (ADT) to the tissue.


Q Can 4% PFA be repeatedly frozen and thawed for use?
A

Repeated freezing and thawing are not recommended. It is recommended to aliquot the original 4% PFA into smaller tubes after the first thaw and store them at -20°C for long-term storage until the expiration date. For short-term use within one week, it is recommended to store at 4°C.


Q The current protocol uses PFA to fix the sections at room temperature after tissue sectioning. Can the sample be fixed with PFA before OCT embedding for subsequent experiments?
A
Currently, the Stereo-CITE Proteo-Transcriptome protocol is not compatible with PFA-fixed samples and is only suitable for freshly embedded samples.


Q How many proteins can the current product detect simultaneously? What are the main research areas of these protein targets?
A
This product is compatible with three types of protein antibody panels for detecting different numbers of proteins.

(1)Commercial protein panels, such as TotalSeq™-A Mouse Universal Cocktail, V1.0 (Biolegend, Cat. No. 199901) and TotalSeq™-A Human Universal Cocktail, V1.0 (Biolegend, Cat. No. 399907). These panels can detect 119 and 154 proteins (excluding isotype controls), respectively. The proteins targeted by these panels are mainly cell surface proteins, including those used for immune cell typing.

(2)Freely mixed TotalSeq ™ -A series antibodies, with the number of proteins depending on your selection;

(3)Freely mixed self-conjugated antibodies. For example, you can use the Stereo-seq self-conjugation kit to conjugate your primary antibodies of interest with antibody-derived-tag (ADT) oligonucleotides. After verifying that these antibodies are compatible with the Stereo-CITE workflow, you can freely mix them to achieve the desired number of proteins.


Q How to minimize tissue wrinkling during cryosectioning?
A
It is recommended that the cold mounting method be selected and solutions be added and discarded slowly throughout the process.
Q Does omitting the primary and secondary antibodies, along with the Fc blocking reagent, during the permeabilization step affect the determination of the optimal permeabilization time?
A
No, it won't affect the results.
Q If a fresh frozen sample has already been tested in the Stereo-seq Transcriptomics workflow with other staining methods (e.g., H&E or ssDNA), is it necessary to perform a permeabilization optimization experiment using the mIF protocol?
A
The permeabilization optimization experiment is necessary for the mIF workflow. In the mIF permeabilization protocol, the mIF staining and imaging process should take place between the methanol fixation and tissue permeabilization steps, although the primary and secondary antibodies, along with the Fc blocking reagent, can be replaced with nuclease-free water.


Q Is the Fc blocking reagent required for the blocking solution?
A
It is strongly recommended that users add Fc blocking solutions that are not homologous to the primary antibody.


Q Can I move the Stereo-seq Chip Slide after switching the channels for an mIF image?
A
Do not move the Stereo-seq Chip Slide when capturing multiple IF images. The slide must be kept still until the IF images from all channels have been captured. Moreover, applying a drop of water on the imaging stage prior to positioning the Stereo-seq Chip Slide is critical to the imaging process. This ensures the slide remains stationary during imaging, thereby avoiding any mobile bias.


Reach out to Us
Discover the power of Stereo-seq
Consult