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104results:
Q What is the shelf life of the reagents?
A

Please refer to the kit label.

Q Which type of samples are currently suitable for Stereo-seq Transcriptomics Set V1.3 for fresh frozen samples?
A

The set is applicable to all common animal samples.

Q What should be paid attention for fresh frozen tissue embedding?
A

For applying 1 cm × 1 cm Chip T, the tissue size should be no more than 0.9 cm x 0.9 cm x 2 cm  and appropriate cryomold or stainless- steel based mold should be chosen based on tissue size. To avoid RNA degradation, tissue embedding should be finished within 30 min after tissue harvest. Excess liquid on the tissue should be removed to avoid ice formation during embedding. Air bubbles should be avoided when filling the OCT in the Cryomold or stainless-steel.

Q What could cause a serious distortion of the tissue during fresh frozen sample embedding?
A

The distortion of tissue could be caused by the following:  

(1) tissue compression during tissue harvest;

(2) excess OCT during freezing; 

(3) stiff embedding molds causing OCT fail to expand and squeeze the tissue in mould. 

In this case, it is recommended to adjust embedding techniques and tools for tissue integrity. 

Q How to avoid ice crystal formation within the tissue in fresh frozen sample embedding?
A

Excess liquid on the tissue should be removed before freezing. Rapid freezing is recommended to avoid ice crystals in the tissue since slow freezing may be more likely to produce large ice crystals.

Q Will the amount of OCT affect the tissue during fresh frozen embedding?
A

Tissue may be squeezed when submerged in excess OCT, especially for small tissues. Therefore, it is recommended to choose an appropriate cryomold or stainless-steel based mold based on your sample size. 

Q Does OCT affect RNA extraction and RIN evaluation?
A

Yes, excessive OCT will affect the result of RNA extraction.

Q How to avoid mRNA degradation during fresh frozen sample embedding?
A

It is strongly recommended to perform tissue embedding within 30 minutes after tissue harvest to avoid tissue RNA degradation to the greatest extent.

Q What is the acceptable number of times for transferring tissue section from a-80℃ freezer to cryostat?
A

We have tested that transferring tissue from -80℃ freezer to cryostat up to 4 times will not affect the mean gene counts in mouse brain tissue.

Q What is the cause for hole formation in cryosectioning?
A

In addition to differences in tissue types, hole formation in the tissue may often result from the following reasons: 

(1) Ice crystal formation due to slow or ineffective freezing; 

(2) Air bubble introduced in freezing the tissue with OCT; 

(3) Improper histology brushes was used that can damage fragile tissues.

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