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STOmics has been widely applied in organogenesis, embryo development, evolution, neuroscience and oncology research, and other different fields. Up to now, approximately 30 papers using Stereo-seq have been published on Cell, Nature, Science, and other top academic journals.

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01/03/2023 DOI:10.1038/s41467-023-36796-3

Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST

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Nature Communications Species·human, mouse Sample Type·brain, breast,embryo

03/02/2023 DOI:10.1101/2023.02.02.526814

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices modeling of multiple slices

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bioRxiv

01/02/2023 Noorya, Y. et al. DOI: 10.3389/fcell.2023.1112062

Developmental deficits of MGE-derived interneurons in the Cntnap2 knockout mouse model of autism spectrum disorder

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Frontiers in cell and developmental biology Application·Disease Species·mouse Sample Type·brain

09/01/2023 10.1038/s42255-022-00713-7

Implantation underneath the abdominal anterior rectus sheath enables effective and functional engraftment of stem-cell-derived islets

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Nature Metabolism Species·rhesus macaques Sample Type·islets

08/01/2023 DOI:10.1101/2023.01.08.523162

PASTE2: Partial Alignment of Multi-slice Spatially Resolved Transcriptomics Data

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bioRxiv

21/12/2022 DOI:10.1016/j.xplc.2022.100508

Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives

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Plant communications

11/12/2022 DOI:10.1101/2022.12.07.519417

Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics

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bioRxiv

10/12/2022 DOI:10.1038/s41467-022-35288-0

Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

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Nature Communications Application·Bioinformatic tools Species·mouse Sample Type·brain, lung, testis

08/12/2022 DOI:10.1101/2022.12.08.519589

STOmics-GenX: CRISPR based approach to improve cell identity specific gene detection from spatially resolved transcriptomics

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bioRxiv

06/12/2022 Liu, Z. et al. DOI: 10.3389/fcell.2022.1060298

Resolving the gene expression maps of human first-trimester chorionic villi with spatial transcriptome

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Frontiers in Cell and Developmental Biology Application·Developmental biology Species·human Sample Type·placenta
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