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Articles List of STOmics' Stereo-seq DownloadDownload

19/04/2025 DOI:10.1038/s41467-025-59070-0

An Organ-wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart

Nature Communications Species·zebrafish Sample Type·heart

17/04/2025 DOI: 10.1093/nargab/lqaf044

Fast analysis of Spatial Transcriptomics (FaST): an ultra lightweight and fast pipeline for the analysis of high resolution spatial transcriptomics

NAR Genomics and Bioinformatics Species·human, mouse

16/04/2025 DOI:10.1016/j.cels.2025.101243

SpaGRN: investigating spatially informed regulatory paths for spatially resolved transcriptomics data

Cell Systems Species·developing Drosophila embryos and larvae Sample Type·Complex cancerous samples, and 3D datasets

11/04/2025 DOI:10.1016/j.cell.2025.03.024

An Arabidopsis single-nucleus atlas decodes leaf senescence and nutrient allocation

Cell Species·Arabidopsis Sample Type·Twenty tissues encompassing multiple developmental stages

09/04/2025 DOI:10.1038/s41467-025-58511-0

Spatially resolved atlas of breast cancer uncovers intercellular machinery of venular niche governing lymphocyte extravasation

Nature Communications Species·human Sample Type·30 primary breast tumors and metastatic lymph nodes across different molecular subtypes

08/04/2025 DOI:10.1016/j.devcel.2025.03.009

Transcriptional conservation and evolutionary divergence of cell types across mammalian hypothalamus development

Developmental Cell Species·human and mouse Sample Type·hypothalamus

08/04/2025 10.1038/s41467-025-58614-8

Single-nucleus and spatial transcriptomics identify brain landscape of gene regulatory networks associated with behavioral maturation in honeybees

Nature Communications Species·nurse bees and forager bees Sample Type·brain tissue

06/04/2025 DOI:10.1016/j.molp.2025.04.001

Comparative spatial transcriptomics reveals root dryland adaptation mechanism in rice and HMGB1 as a key regulator

Molecular Plant Species·upland rice and irrigated rice Sample Type·root tissues

03/04/2025 DOI:10.1016/j.ccell.2025.03.011

Spatial transcriptomics reveals tryptophan metabolism restricting maturation of intratumoral tertiary lymphoid structures

Cancer Cell Species·human and mouse Sample Type·hepatocellular carcinoma tissues

03/04/2025 DOI:10.1242/dev.204346

Morphogenic, molecular and cellular adaptations for unidirectional airflow in the chicken lung

Development Species·chicken Sample Type·lung

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